PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G252400.1
Common NameB456_001G252400, LOC105771764
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 141aa    MW: 15543 Da    PI: 4.7447
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G252400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.6e-181769256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkklege 56
                        +y+GVr+++ +g+++AeIrd +  +g   r +lg+f+tae+Aa+a+++a+ +++g+
  Gorai.001G252400.1 17 RYRGVRRRP-WGKFAAEIRDSTRlGG--PRLWLGTFDTAEDAARAYDRAAFAMRGA 69
                        59*******.**********433354..*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.9E-341782IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-301778IPR001471AP2/ERF domain
PfamPF008472.5E-131768IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-221778IPR016177DNA-binding domain
CDDcd000181.42E-181777No hitNo description
PROSITE profilePS5103223.4331776IPR001471AP2/ERF domain
PRINTSPR003672.8E-111829IPR001471AP2/ERF domain
PRINTSPR003672.8E-114258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MEGDKSKKAG EGDSSIRYRG VRRRPWGKFA AEIRDSTRLG GPRLWLGTFD TAEDAARAYD  60
RAAFAMRGAS AILNFPDEHM ASPTTNPPPS SSMASSSSSS SAIENAERKR EHDTQVLELE  120
YLDDELLEQL LDFDNKDTKD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-251876663ATERF1
3gcc_A2e-251876663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6156451e-131JX615645.1 Gossypium hirsutum clone NBRI_GE59730 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448618.16e-99PREDICTED: ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC55e-38ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A0D2PRQ97e-99A0A0D2PRQ9_G
STRINGPOPTR_0008s16600.12e-38(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2489734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-17ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]